IL_8OIT_052

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

8OIT|1|B8|A|1389, 8OIT|1|B8|C|1390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_052 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.1174

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8OIT|1|B8|C|1329
8OIT|1|B8|A|1330
*
8OIT|1|B8|U|1388
8OIT|1|B8|A|1389
8OIT|1|B8|C|1390
8OIT|1|B8|G|1391

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BM

39S ribosomal protein L3, mitochondrial

Chain BR

39S ribosomal protein L13, mitochondrial