IL_8OIT_054

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_054 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1701

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8OIT|1|B8|G|1405
8OIT|1|B8|A|1406
8OIT|1|B8|C|1407
*
8OIT|1|B8|G|1421
8OIT|1|B8|U|1422
8OIT|1|B8|C|1423

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(Met)

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BL

39S ribosomal protein L2, mitochondrial