IL_8OIT_059

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CA*UUUG

Length

6 nucleotides

Bulged bases

8OIT|1|B8|U|1558, 8OIT|1|B8|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_059 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.227

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8OIT|1|B8|C|1542
8OIT|1|B8|A|1543
*
8OIT|1|B8|U|1557
8OIT|1|B8|U|1558
8OIT|1|B8|U|1559
8OIT|1|B8|G|1560

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BH

39S ribosomal protein L32, mitochondrial

Chain BM

39S ribosomal protein L3, mitochondrial

Chain BV

39S ribosomal protein L17, mitochondrial

Chain Bo

39S ribosomal protein L39, mitochondrial