IL_8OIT_061
3D structure
- PDB id
- 8OIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCA*UAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIT_061 not in the Motif Atlas
- Geometric match to IL_4WF9_042
- Geometric discrepancy: 0.1202
- The information below is about IL_4WF9_042
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
8OIT|1|B9|C|26
8OIT|1|B9|C|27
8OIT|1|B9|A|28
*
8OIT|1|B9|U|38
8OIT|1|B9|A|39
8OIT|1|B9|G|40
Current chains
- Chain B9
- CP Val-tRNA(Val)
Nearby chains
- Chain BW
- 39S ribosomal protein L18, mitochondrial
- Chain Bd
- 39S ribosomal protein L55, mitochondrial
- Chain Bn
- 39S ribosomal protein L38, mitochondrial
- Chain Bp
- 39S ribosomal protein L40, mitochondrial
- Chain Bv
- 39S ribosomal protein L46, mitochondrial
- Chain Bw
- 39S ribosomal protein L48, mitochondrial
Coloring options: