IL_8OJ0_010

3D structure

PDB id

8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCG,CGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ0_010 not in the Motif Atlas

Geometric match to IL_5ZTM_001

Geometric discrepancy: 0.2511

The information below is about IL_5ZTM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8OJ0|1|5|G|177
8OJ0|1|5|C|178
8OJ0|1|5|G|179
*
8OJ0|1|5|C|257
8OJ0|1|5|G|258
8OJ0|1|5|C|259

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35