IL_8OJ0_044

3D structure

PDB id

8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ0_044 not in the Motif Atlas

Geometric match to IL_6WZR_001

Geometric discrepancy: 0.1288

The information below is about IL_6WZR_001

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

8OJ0|1|5|C|1431
8OJ0|1|5|G|1432
8OJ0|1|5|A|1433
8OJ0|1|5|G|1434
*
8OJ0|1|5|C|1450
8OJ0|1|5|G|1451
8OJ0|1|5|A|1452
8OJ0|1|5|G|1453

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18