IL_8OJ0_103

3D structure

PDB id

8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8OJ0|1|5|C|3701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ0_103 not in the Motif Atlas

Homologous match to IL_8C3A_089

Geometric discrepancy: 0.1068

The information below is about IL_8C3A_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8OJ0|1|5|C|3700
8OJ0|1|5|C|3701
8OJ0|1|5|A|3702
8OJ0|1|5|G|3703
*
8OJ0|1|5|C|3749
8OJ0|1|5|G|3750

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

E3 UFM1-protein ligase 1

Chain LA

60S ribosomal protein L8