IL_8OJ8_019

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGC*GUC

Length

7 nucleotides

Bulged bases

8OJ8|1|5|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ8_019 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2287

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8OJ8|1|5|G|448
8OJ8|1|5|C|449
8OJ8|1|5|G|450
8OJ8|1|5|C|451
*
8OJ8|1|5|G|1296
8OJ8|1|5|U|1297
8OJ8|1|5|C|1298

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a