IL_8OJ8_028

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

8OJ8|1|5|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ8_028 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2303

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8OJ8|1|5|G|508
8OJ8|1|5|A|509
8OJ8|1|5|U|510
*
8OJ8|1|5|A|649
8OJ8|1|5|C|650

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a