IL_8OJ8_033

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

8OJ8|1|5|A|932, 8OJ8|1|5|C|934, 8OJ8|1|5|A|935, 8OJ8|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OJ8|1|5|A|732
8OJ8|1|5|A|733
8OJ8|1|5|G|734
8OJ8|1|5|G|735
*
8OJ8|1|5|C|928
8OJ8|1|5|A|929
8OJ8|1|5|G|930
8OJ8|1|5|C|931
8OJ8|1|5|A|932
8OJ8|1|5|G|933
8OJ8|1|5|C|934
8OJ8|1|5|A|935
8OJ8|1|5|C|936
8OJ8|1|5|U|937

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a