IL_8OJ8_034

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGG*CCG

Length

7 nucleotides

Bulged bases

8OJ8|1|5|C|738, 8OJ8|1|5|G|739, 8OJ8|1|5|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ8_034 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.2555

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8OJ8|1|5|C|737
8OJ8|1|5|C|738
8OJ8|1|5|G|739
8OJ8|1|5|G|740
*
8OJ8|1|5|C|924
8OJ8|1|5|C|925
8OJ8|1|5|G|926

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14