IL_8OJ8_039

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8OJ8|1|5|C|1214, 8OJ8|1|5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ8_039 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.3023

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8OJ8|1|5|C|1082
8OJ8|1|5|U|1083
8OJ8|1|5|C|1084
*
8OJ8|1|5|G|1213
8OJ8|1|5|C|1214
8OJ8|1|5|C|1215
8OJ8|1|5|C|1216
8OJ8|1|5|G|1217

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29