IL_8OJ8_043

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGA*UGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ8_043 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.1882

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8OJ8|1|5|C|1172
8OJ8|1|5|G|1173
8OJ8|1|5|G|1174
8OJ8|1|5|A|1175
*
8OJ8|1|5|U|1186
8OJ8|1|5|G|1187
8OJ8|1|5|C|1188
8OJ8|1|5|G|1189

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5