IL_8OJ8_048

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ8_048 not in the Motif Atlas

Geometric match to IL_5BTP_004

Geometric discrepancy: 0.1324

The information below is about IL_5BTP_004

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8OJ8|1|5|C|1431
8OJ8|1|5|G|1432
8OJ8|1|5|A|1433
8OJ8|1|5|G|1434
*
8OJ8|1|5|C|1450
8OJ8|1|5|G|1451
8OJ8|1|5|A|1452
8OJ8|1|5|G|1453

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18