IL_8OJ8_069

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCC*GAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ8_069 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2047

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

8OJ8|1|5|G|1760
8OJ8|1|5|G|1761
8OJ8|1|5|C|1762
8OJ8|1|5|C|1763
*
8OJ8|1|5|G|1769
8OJ8|1|5|A|1770
8OJ8|1|5|U|1771
8OJ8|1|5|C|1772

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

E3 UFM1-protein ligase 1