IL_8OJ8_089

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ8_089 not in the Motif Atlas

Geometric match to IL_2D6F_001

Geometric discrepancy: 0.3043

The information below is about IL_2D6F_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8OJ8|1|5|G|2542
8OJ8|1|5|A|2543
8OJ8|1|5|G|2547
*
8OJ8|1|5|C|2772
8OJ8|1|5|G|2773
8OJ8|1|5|C|2774

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lk

60S ribosomal protein L38