IL_8OJ8_133
3D structure
- PDB id
- 8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OJ8_133 not in the Motif Atlas
- Homologous match to IL_8C3A_114
- Geometric discrepancy: 0.1317
- The information below is about IL_8C3A_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8OJ8|1|5|C|4412
8OJ8|1|5|C|4413
8OJ8|1|5|A|4414
8OJ8|1|5|A|4415
8OJ8|1|5|G|4416
*
8OJ8|1|5|C|4426
8OJ8|1|5|G|4427
8OJ8|1|5|A|4428
8OJ8|1|5|C|4429
8OJ8|1|5|G|4430
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LI
- Ribosomal protein uL16-like
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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