IL_8OLY_003

3D structure

PDB id

8OLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron post first step of splicing in the presence of K+, Mg2+ and intronistat B

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

CAAG*UGAAGGAAG

Length

13 nucleotides

Bulged bases

8OLY|1|A|A|106, 8OLY|1|A|G|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OLY|1|A|C|76
8OLY|1|A|A|77
8OLY|1|A|A|78
8OLY|1|A|G|79
*
8OLY|1|A|U|103
8OLY|1|A|G|104
8OLY|1|A|A|105
8OLY|1|A|A|106
8OLY|1|A|G|107
8OLY|1|A|G|108
8OLY|1|A|A|109
8OLY|1|A|A|110
8OLY|1|A|G|111

Current chains

Chain A

Group IIC intron

Nearby chains

Chain B

5'-exon