IL_8OM0_003

3D structure

PDB id

8OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+ and intronistat B

Experimental method

X-RAY DIFFRACTION

Resolution

3.61 Å

Loop

Sequence

CAAG*UGAAGGAAG

Length

13 nucleotides

Bulged bases

8OM0|1|A|A|106, 8OM0|1|A|G|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OM0|1|A|C|76
8OM0|1|A|A|77
8OM0|1|A|A|78
8OM0|1|A|G|79
*
8OM0|1|A|U|103
8OM0|1|A|G|104
8OM0|1|A|A|105
8OM0|1|A|A|106
8OM0|1|A|G|107
8OM0|1|A|G|108
8OM0|1|A|A|109
8OM0|1|A|A|110
8OM0|1|A|G|111

Current chains

Chain A

Domains 1-5

Nearby chains