IL_8OM0_006

3D structure

PDB id

8OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+ and intronistat B

Experimental method

X-RAY DIFFRACTION

Resolution

3.61 Å

Loop

Sequence

GAGGAACACGAAC*GC

Length

15 nucleotides

Bulged bases

8OM0|1|A|A|137, 8OM0|1|A|A|138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OM0|1|A|G|133
8OM0|1|A|A|134
8OM0|1|A|G|135
8OM0|1|A|G|136
8OM0|1|A|A|137
8OM0|1|A|A|138
8OM0|1|A|C|139
8OM0|1|A|A|140
8OM0|1|A|C|141
8OM0|1|A|G|142
8OM0|1|A|A|143
8OM0|1|A|A|144
8OM0|1|A|C|145
*
8OM0|1|A|G|229
8OM0|1|A|C|230

Current chains

Chain A

Domains 1-5

Nearby chains