IL_8OO0_005
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 8OO0|1|1|A|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_005 not in the Motif Atlas
- Homologous match to IL_5TBW_005
- Geometric discrepancy: 0.1083
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8OO0|1|1|C|32
8OO0|1|1|U|33
8OO0|1|1|G|34
8OO0|1|1|A|35
8OO0|1|1|A|36
8OO0|1|1|C|37
8OO0|1|1|U|38
8OO0|1|1|U|39
*
8OO0|1|1|A|46
8OO0|1|1|U|47
8OO0|1|1|C|48
8OO0|1|1|A|49
8OO0|1|1|A|50
8OO0|1|1|U|51
8OO0|1|1|A|52
8OO0|1|1|A|53
8OO0|1|1|G|54
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain La
- Ribosomal protein L18e/L15P domain-containing protein
- Chain Lj
- Ribosomal protein L37
- Chain Lo
- 60S ribosomal protein L44-like protein
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