IL_8OO0_007

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CGUUGU

Length

8 nucleotides

Bulged bases

8OO0|1|1|U|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_007 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.1482

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8OO0|1|1|A|124
8OO0|1|1|G|125
*
8OO0|1|1|C|140
8OO0|1|1|G|141
8OO0|1|1|U|142
8OO0|1|1|U|143
8OO0|1|1|G|144
8OO0|1|1|U|145

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

60S ribosomal protein L8

Chain LN

Ribosomal protein L15