IL_8OO0_016

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_016 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.1445

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8OO0|1|1|G|293
8OO0|1|1|G|294
8OO0|1|1|A|295
*
8OO0|1|1|U|306
8OO0|1|1|U|307
8OO0|1|1|C|308

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

Ribosomal protein L15

Chain Li

60S ribosomal protein L36