IL_8OO0_029

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8OO0|1|1|A|762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_029 not in the Motif Atlas

Homologous match to IL_5TBW_024

Geometric discrepancy: 0.1193

The information below is about IL_5TBW_024

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8OO0|1|1|C|734
8OO0|1|1|C|735
*
8OO0|1|1|G|761
8OO0|1|1|A|762
8OO0|1|1|G|763

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LQ

Ribosomal protein L18-like protein

Chain La

Ribosomal protein L18e/L15P domain-containing protein