IL_8OO0_031

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_031 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1114

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8OO0|1|1|C|740
8OO0|1|1|U|741
8OO0|1|1|G|742
8OO0|1|1|A|743
8OO0|1|1|U|744
8OO0|1|1|G|745
*
8OO0|1|1|C|750
8OO0|1|1|G|751
8OO0|1|1|G|752
8OO0|1|1|A|753
8OO0|1|1|U|754
8OO0|1|1|G|755

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

Ribosomal protein L18e/L15P domain-containing protein

Chain Lo

60S ribosomal protein L44-like protein