IL_8OO0_050

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*UAG

Length

5 nucleotides

Bulged bases

8OO0|1|1|A|1012

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_050 not in the Motif Atlas

Geometric match to IL_8VFS_004

Geometric discrepancy: 0.3944

The information below is about IL_8VFS_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8OO0|1|1|C|1004
8OO0|1|1|G|1005
*
8OO0|1|1|U|1011
8OO0|1|1|A|1012
8OO0|1|1|G|1013

Current chains

Chain 1

28S rRNA

Nearby chains