IL_8OO0_054

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_054 not in the Motif Atlas

Homologous match to IL_8C3A_050

Geometric discrepancy: 0.1134

The information below is about IL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8OO0|1|1|U|1106
8OO0|1|1|U|1107
8OO0|1|1|U|1108
*
8OO0|1|1|A|1116
8OO0|1|1|G|1117
8OO0|1|1|A|1118

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain LI

60S ribosomal protein L10-like protein

Chain Lb

60S ribosomal protein L29