IL_8OO0_104

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8OO0|1|1|U|2373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_104 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.1618

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8OO0|1|1|G|2372
8OO0|1|1|U|2373
8OO0|1|1|U|2374
*
8OO0|1|1|A|2770
8OO0|1|1|C|2771

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain La

Ribosomal protein L18e/L15P domain-containing protein