IL_8OO0_110

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_110 not in the Motif Atlas

Geometric match to IL_5TBW_047

Geometric discrepancy: 0.1546

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8OO0|1|1|A|2587
8OO0|1|1|U|2588
8OO0|1|1|C|2589
*
8OO0|1|1|G|2607
8OO0|1|1|G|2608
8OO0|1|1|U|2609

Current chains

Chain 1

28S rRNA

Nearby chains

Chain C

Ribosome-associated molecular chaperone SSB1

Chain LI

60S ribosomal protein L10-like protein

Chain LT

60S ribosomal protein l21-like protein