IL_8OO0_114

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_114 not in the Motif Atlas

Homologous match to IL_8C3A_110

Geometric discrepancy: 0.2814

The information below is about IL_8C3A_110

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8OO0|1|1|G|2729
8OO0|1|1|U|2730
8OO0|1|1|C|2731
8OO0|1|1|C|2732
*
8OO0|1|1|G|2746
8OO0|1|1|C|2747

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LQ

Ribosomal protein L18-like protein

Chain La

Ribosomal protein L18e/L15P domain-containing protein

Chain Lo

60S ribosomal protein L44-like protein