IL_8OO0_115

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_115 not in the Motif Atlas

Geometric match to IL_5TBW_102

Geometric discrepancy: 0.147

The information below is about IL_5TBW_102

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8OO0|1|1|G|2782
8OO0|1|1|G|2783
*
8OO0|1|1|U|2824
8OO0|1|1|C|2825
8OO0|1|1|C|2826

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LI

60S ribosomal protein L10-like protein

Chain Lb

60S ribosomal protein L29