IL_8OO0_136

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8OO0|1|1|U|3131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_136 not in the Motif Atlas

Geometric match to IL_5J7L_017

Geometric discrepancy: 0.2124

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8OO0|1|1|G|3130
8OO0|1|1|U|3131
8OO0|1|1|A|3132
*
8OO0|1|1|U|3156
8OO0|1|1|C|3157

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain Lf

60S ribosomal protein l33-like protein