IL_8OO0_165

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAUCAA*UGACAACGG

Length

16 nucleotides

Bulged bases

8OO0|1|2|U|310, 8OO0|1|2|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OO0|1|2|C|307
8OO0|1|2|U|308
8OO0|1|2|A|309
8OO0|1|2|U|310
8OO0|1|2|C|311
8OO0|1|2|A|312
8OO0|1|2|A|313
*
8OO0|1|2|U|345
8OO0|1|2|G|346
8OO0|1|2|A|347
8OO0|1|2|C|348
8OO0|1|2|A|349
8OO0|1|2|A|350
8OO0|1|2|C|351
8OO0|1|2|G|352
8OO0|1|2|G|353

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11-like protein

Chain SX

40S ribosomal protein s23-like protein