IL_8OO0_166

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_166 not in the Motif Atlas

Homologous match to IL_8C3A_411

Geometric discrepancy: 0.3405

The information below is about IL_8C3A_411

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71854.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8OO0|1|2|U|315
8OO0|1|2|U|316
8OO0|1|2|U|317
8OO0|1|2|C|318
8OO0|1|2|G|319
8OO0|1|2|A|320
*
8OO0|1|2|U|342
8OO0|1|2|G|343

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain LR

Ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11-like protein