IL_8OO0_175

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

8OO0|1|2|A|538, 8OO0|1|2|A|539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_175 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.3153

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8OO0|1|2|G|511
8OO0|1|2|A|512
8OO0|1|2|G|513
*
8OO0|1|2|C|533
8OO0|1|2|G|534
8OO0|1|2|A|535
8OO0|1|2|G|536
8OO0|1|2|G|537
8OO0|1|2|A|538
8OO0|1|2|A|539
8OO0|1|2|C|540

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein s9-like protein

Chain Se

40S ribosomal protein S30