IL_8OO0_184

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

8OO0|1|2|U|677

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_184 not in the Motif Atlas

Geometric match to IL_5TBW_003

Geometric discrepancy: 0.3359

The information below is about IL_5TBW_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8OO0|1|2|C|648
8OO0|1|2|G|649
*
8OO0|1|2|C|676
8OO0|1|2|U|677
8OO0|1|2|G|678

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein s9-like protein