IL_8OO0_199

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8OO0|1|2|G|911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_199 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.1359

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8OO0|1|2|U|891
8OO0|1|2|U|892
8OO0|1|2|G|893
8OO0|1|2|U|894
8OO0|1|2|C|895
8OO0|1|2|A|896
8OO0|1|2|G|897
*
8OO0|1|2|C|908
8OO0|1|2|U|909
8OO0|1|2|U|910
8OO0|1|2|G|911
8OO0|1|2|G|912
8OO0|1|2|A|913
8OO0|1|2|U|914
8OO0|1|2|U|915
8OO0|1|2|U|916
8OO0|1|2|A|917

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain SB

40S ribosomal protein S1

Chain SO

40S ribosomal protein S14-like protein