IL_8OO0_205

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_205 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.2572

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

8OO0|1|2|G|1049
8OO0|1|2|C|1050
8OO0|1|2|G|1051
*
8OO0|1|2|C|1063
8OO0|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein S0

Chain SB

40S ribosomal protein S1

Chain SR

40S ribosomal protein S17-like protein

Chain Sb

Ribosomal protein s27-like protein