IL_8OO0_211

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_211 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2291

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8OO0|1|2|U|1172
8OO0|1|2|G|1173
8OO0|1|2|C|1174
8OO0|1|2|G|1175
*
8OO0|1|2|C|1457
8OO0|1|2|G|1458
8OO0|1|2|C|1459
8OO0|1|2|G|1460

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein s15-like protein

Chain SQ

40S ribosomal protein S16-like protein

Chain SS

Putative ribosomal protein