IL_8OO0_216

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8OO0|1|2|U|1266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_216 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.1548

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8OO0|1|2|G|1265
8OO0|1|2|U|1266
8OO0|1|2|G|1267
*
8OO0|1|2|C|1436
8OO0|1|2|C|1437

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

Methionine aminopeptidase 2

Chain Sd

40S ribosomal protein S29

Chain Sf

40S ribosomal protein S27a-like protein