IL_8OO0_217
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 8OO0|1|2|C|1271
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_217 not in the Motif Atlas
- Geometric match to IL_4V88_450
- Geometric discrepancy: 0.1555
- The information below is about IL_4V88_450
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.2
- Basepair signature
- cWW-L-cWS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8OO0|1|2|U|1269
8OO0|1|2|G|1270
8OO0|1|2|C|1271
8OO0|1|2|A|1272
8OO0|1|2|U|1273
*
8OO0|1|2|A|1432
8OO0|1|2|U|1433
8OO0|1|2|G|1434
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3-like protein
- Chain SK
- 40S ribosomal protein s10-like protein
- Chain SU
- 40S ribosomal protein S20-like protein
- Chain Sd
- 40S ribosomal protein S29
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