IL_8OO0_222
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGC*GAG
- Length
- 7 nucleotides
- Bulged bases
- 8OO0|1|2|U|1337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_222 not in the Motif Atlas
- Geometric match to IL_4V88_455
- Geometric discrepancy: 0.1396
- The information below is about IL_4V88_455
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8OO0|1|2|C|1336
8OO0|1|2|U|1337
8OO0|1|2|G|1338
8OO0|1|2|C|1339
*
8OO0|1|2|G|1380
8OO0|1|2|A|1381
8OO0|1|2|G|1382
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Putative guanine nucleotide-binding protein
- Chain SQ
- 40S ribosomal protein S16-like protein
- Chain SR
- 40S ribosomal protein S17-like protein
- Chain SU
- 40S ribosomal protein S20-like protein
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