IL_8OO0_223

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUA,UAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_223 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2744

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8OO0|1|2|C|1339
8OO0|1|2|U|1340
8OO0|1|2|A|1341
*
8OO0|1|2|U|1378
8OO0|1|2|A|1379
8OO0|1|2|G|1380

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Putative guanine nucleotide-binding protein

Chain SQ

40S ribosomal protein S16-like protein

Chain SU

40S ribosomal protein S20-like protein