IL_8OO0_225

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GCCG

Length

6 nucleotides

Bulged bases

8OO0|1|2|C|1369, 8OO0|1|2|C|1370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_225 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.1665

The information below is about IL_4V9F_021

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8OO0|1|2|C|1348
8OO0|1|2|C|1349
*
8OO0|1|2|G|1368
8OO0|1|2|C|1369
8OO0|1|2|C|1370
8OO0|1|2|G|1371

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16-like protein

Chain SU

40S ribosomal protein S20-like protein