IL_8OO0_227
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAU*AUGGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_227 not in the Motif Atlas
- Geometric match to IL_4LFB_050
- Geometric discrepancy: 0.3071
- The information below is about IL_4LFB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32376.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8OO0|1|2|C|1386
8OO0|1|2|U|1387
8OO0|1|2|A|1388
8OO0|1|2|U|1389
*
8OO0|1|2|A|1402
8OO0|1|2|U|1403
8OO0|1|2|G|1404
8OO0|1|2|G|1405
8OO0|1|2|A|1406
8OO0|1|2|A|1407
8OO0|1|2|G|1408
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Putative guanine nucleotide-binding protein
- Chain SF
- 40S ribosomal protein s5-like protein
- Chain SQ
- 40S ribosomal protein S16-like protein
- Chain SR
- 40S ribosomal protein S17-like protein
- Chain Sc
- 40S ribosomal protein S28-like protein
Coloring options: