IL_8OO0_228
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCAGCGA*UUGUUAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_228 not in the Motif Atlas
- Homologous match to IL_8C3A_466
- Geometric discrepancy: 0.1972
- The information below is about IL_8C3A_466
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48143.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OO0|1|2|G|1476
8OO0|1|2|C|1477
8OO0|1|2|C|1478
8OO0|1|2|A|1479
8OO0|1|2|G|1480
8OO0|1|2|C|1481
8OO0|1|2|G|1482
8OO0|1|2|A|1483
*
8OO0|1|2|U|1515
8OO0|1|2|U|1516
8OO0|1|2|G|1517
8OO0|1|2|U|1518
8OO0|1|2|U|1519
8OO0|1|2|A|1520
8OO0|1|2|A|1521
8OO0|1|2|A|1522
8OO0|1|2|C|1523
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3-like protein
- Chain SF
- 40S ribosomal protein s5-like protein
- Chain SQ
- 40S ribosomal protein S16-like protein
- Chain ST
- 40S ribosomal protein S19-like protein
- Chain SU
- 40S ribosomal protein S20-like protein
- Chain SZ
- 40S ribosomal protein S25
- Chain Sd
- 40S ribosomal protein S29
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