IL_8OO0_236
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8OO0|1|2|A|1752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_236 not in the Motif Atlas
- Geometric match to IL_4WF9_109
- Geometric discrepancy: 0.3187
- The information below is about IL_4WF9_109
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
8OO0|1|2|C|1640
8OO0|1|2|G|1641
8OO0|1|2|C|1642
8OO0|1|2|U|1643
*
8OO0|1|2|A|1749
8OO0|1|2|A|1750
8OO0|1|2|A|1751
8OO0|1|2|A|1752
8OO0|1|2|G|1753
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- Methionine aminopeptidase 2
- Chain Ln
- 60S ribosomal protein L41-A
- Chain SX
- 40S ribosomal protein s23-like protein
- Chain Se
- 40S ribosomal protein S30
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