IL_8OO0_241

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_241 not in the Motif Atlas

Homologous match to IL_8C3A_478

Geometric discrepancy: 0.0895

The information below is about IL_8C3A_478

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8OO0|1|2|U|1665
8OO0|1|2|G|1666
8OO0|1|2|A|1667
8OO0|1|2|G|1668
*
8OO0|1|2|C|1725
8OO0|1|2|A|1726
8OO0|1|2|A|1727
8OO0|1|2|A|1728

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8