IL_8OO0_248

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

8OO0|1|3|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_248 not in the Motif Atlas

Homologous match to IL_8C3A_143

Geometric discrepancy: 0.2166

The information below is about IL_8C3A_143

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8OO0|1|3|C|15
8OO0|1|3|U|16
*
8OO0|1|3|A|63
8OO0|1|3|A|64
8OO0|1|3|G|65

Current chains

Chain 3

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain LD

60S ribosomal protein l5-like protein

Chain LI

60S ribosomal protein L10-like protein

Chain LJ

Putative ribosomal protein