IL_8OO0_272

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CGAG

Length

7 nucleotides

Bulged bases

8OO0|1|1|A|2287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_272 not in the Motif Atlas

Geometric match to IL_4V9K_064

Geometric discrepancy: 0.2585

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8OO0|1|1|C|2091
8OO0|1|1|U|2092
8OO0|1|1|G|2093
*
8OO0|1|1|C|2285
8OO0|1|1|G|2286
8OO0|1|1|A|2287
8OO0|1|1|G|2288

Current chains

Chain 1

28S rRNA

Nearby chains

Chain Lp

60S ribosomal protein L43-like protein